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For the 2025 school year, there are 5 public schools serving 4,350 students in Muskego, WI (there are , serving 369 private students). 92% of all K-12 students in Muskego, WI are educated in public schools (compared to the WI state average of 85%). Muskego has one of the highest concentrations of top ranked public schools in Wisconsin.

The top ranked public schools in Muskego, WI are Mill Valley Elementary School, Muskego Lakes Middle School and Lake Denoon Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Muskego, WI public schools have an average math proficiency score of 72% (versus the Wisconsin public school average of 40%), and reading proficiency score of 63% (versus the 38% statewide average). Schools in Muskego have an average ranking of 10/10, which is in the top 5% of Wisconsin public schools.

Minority enrollment is 13% of the student body (majority Hispanic), which is less than the Wisconsin public school average of 34% (majority Hispanic and Black).