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For the 2025-26 school year, there are 5 public schools serving 3,618 students in Watkinsville, GA (there are , serving 1,490 private students). 71% of all K-12 students in Watkinsville, GA are educated in public schools (compared to the GA state average of 91%). Watkinsville has one of the highest concentrations of top ranked public schools in Georgia.

The top ranked public schools in Watkinsville, GA are Colham Ferry Elementary School, Oconee County High School and Oconee County Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Watkinsville, GA public schools have an average math proficiency score of 69% (versus the Georgia public school average of 39%), and reading proficiency score of 68% (versus the 40% statewide average). Schools in Watkinsville have an average ranking of 10/10, which is in the top 5% of Georgia public schools.

Minority enrollment is 19% of the student body (majority Hispanic and Black), which is less than the Georgia public school average of 65% (majority Black).